Data Science in the News

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'Self-trained' deep learning to improve disease diagnosis

March 4, 2021 - 
New work by computer scientists at LLNL and IBM Research on deep learning models to accurately diagnose diseases from X-ray images with less labeled data won the Best Paper award for Computer-Aided Diagnosis at the SPIE Medical Imaging Conference on February 19. The technique, which includes novel regularization and “self-training” strategies, addresses some well-known challenges in the...

CASC research in machine learning robustness debuts at AAAI conference

Feb. 10, 2021 - 
LLNL’s Center for Applied Scientific Computing (CASC) has steadily grown its reputation in the artificial intelligence (AI)/machine learning (ML) community—a trend continued by three papers accepted at the 35th AAAI Conference on Artificial Intelligence, held virtually on February 2–9, 2021. Computer scientists Jayaraman Thiagarajan, Rushil Anirudh, Bhavya Kailkhura, and Peer-Timo Bremer led...

LLNL physicist wins Young Former Student award

Dec. 16, 2020 - 
Texas A&M University’s Department of Nuclear Engineering on December 10 announced it has honored LLNL physicist Kelli Humbird with its 2020-21 Young Former Student award for her work at LLNL in combining machine learning with inertial confinement fusion (ICF) research. Humbird graduated from Texas A&M with a PhD in nuclear engineering in 2019. Since joining the Laboratory as an intern in 2016...

Data Science Institute collaborates with Livermore Lab Foundation and UC Merced to host two year-long fellowships

Dec. 16, 2020 - 
Early this spring, the Livermore Lab Foundation (LLF) in partnership with the UC Merced, awarded two rising seniors, Jose Garcia-Esparza and Teagan Zuniga, two one-year $15,000 fellowships to participate in the Lab’s Data Science Summer Institute (DSSI) and continue a part-time fellowship at the Lab for the remainder of the 2020–21 school year. The fellowships allow deserving students...

After successful virtual summer, DSSI looks ahead to 2021

Dec. 14, 2020 - 
In a year distinguished by the COVID-19 pandemic, LLNL’s Data Science Summer Institute (DSSI) pivoted quickly to an all-virtual program. The 28 students in the class of 2020 worked from their homes and attended online seminars, one-on-one mentoring sessions, team-building games, and other activities. Instead of an in-person poster session, the students participated in a virtual Summer Slam...

Model for COVID-19 drug discovery a Gordon Bell finalist

Nov. 17, 2020 - 
A machine learning model developed by a team of LLNL scientists to aid in COVID-19 drug discovery efforts is a finalist for the Gordon Bell Special Prize for High Performance Computing-Based COVID-19 Research. Using Sierra, the world’s third fastest supercomputer, LLNL scientists produced a more accurate and efficient generative model to enable COVID-19 researchers to produce novel compounds...

From intern to mentor, Nisha Mulakken builds a career in bioinformatics

Nov. 3, 2020 - 
The COVID-19 pandemic has sparked a wave of new research and development at the Lab, and Nisha Mulakken is very busy. The biostatistician has enhanced the Lawrence Livermore Microbial Detection Array (LLMDA) system with detection capability for all variants of SARS-CoV-2. The technology detects a broad range of organisms—viruses, bacteria, archaea, protozoa, and fungi—and has demonstrated...

Machine learning speeds up and enhances physics calculations

Oct. 1, 2020 - 
Interpreting data from NIF’s cutting-edge high energy density science experiments relies on physics calculations that are so complex they can challenge LLNL supercomputers, which stand among the best in the world. A collaboration between LLNL and French researchers found a novel way to incorporate machine learning and neural networks to significantly speed up inertial confinement fusion...

The internship that launched a machine-learning target revolution

Oct. 1, 2020 - 
Kelli Humbird came to LLNL as a student intern and became a teacher of new data science techniques. In this profile, she describes her experiences and the path that led to her research inertial confinement fusion. Read more at the National Ignition Facility.

Using models, 3D printing to study common heart defect

Aug. 10, 2020 - 
One of the most common congenital heart defects, coarctation of the aorta (CoA) is a narrowing of the main artery transporting blood from the heart to the rest of the body. It affects more than 1,600 newborns each year in the United States, and can lead to health issues such as hypertension, premature coronary artery disease, aneurysms, stroke and cardiac failure. To better understand risk...

Advancing healthcare with data science (VIDEO)

Aug. 3, 2020 - 
This video provides an overview of projects in which data scientists work with domain scientists to address major challenges in healthcare. To help fight the COVID-19 pandemic, researchers are developing computer models to search for potential antibody and antiviral drug treatments, sharing a data portal with scientists and the general public, and analyzing drug compounds via a novel text...

LLNL papers accepted into prestigious conference

July 9, 2020 - 
Two papers featuring LLNL scientists were accepted in the 2020 International Conference on Machine Learning (ICML), one of the world’s premier conferences of its kind. Read more at LLNL News.

Modeling neuronal cultures on 'brain-on-a-chip' devices

June 12, 2020 - 
For the past several years, LLNL scientists and engineers have made significant progress in development of a three-dimensional “brain-on-a-chip” device capable of recording neural activity of human brain cell cultures grown outside the body. The team has developed a statistical model for analyzing the structures of neuronal networks that form among brain cells seeded on in vitro brain-on-a...

Carnegie Live: high energy density science and AI (VIDEO)

June 9, 2020 - 
In this Carnegie Live video, Seiichi Shimasaki, Science Counselor for the Japanese embassy in the U.S., described a multiyear science research program (nicknamed the “Moonshot”) to develop new technologies that help solve some of society’s most pressing challenges. He explained that the Government of Japan was looking for a data science program to mentor young scientists, which led to the...

Lab team studies calibrated AI and deep learning models to more reliably diagnose and treat disease

May 29, 2020 - 
A team led by LLNL computer scientist Jay Thiagarajan has developed a new approach for improving the reliability of artificial intelligence and deep learning-based models used for critical applications, such as health care. Thiagarajan recently applied the method to study chest X-ray images of patients diagnosed with COVID-19, arising due to the novel SARS-Cov-2 coronavirus. Read more at LLNL...

COVID-19 research goes public through new portal

May 18, 2020 - 
A new online data portal is making available to the public a wealth of data LLNL scientists have gathered from their ongoing COVID-19 molecular design projects, particularly the computer-based “virtual” screening of small molecules and designed antibodies for interactions with the SARS-CoV-2 virus for drug design purposes. The portal houses a wealth of data LLNL scientists have gathered from...

Interpretable AI in healthcare (PODCAST)

May 17, 2020 - 
LLNL's Jay Thiagarajan joins the Data Skeptic podcast to discuss his recent paper "Calibrating Healthcare AI: Towards Reliable and Interpretable Deep Predictive Models." The episode runs 35:50. Listen at Data Skeptic.

The incorporation of machine learning into scientific simulations at LLNL (VIDEO)

May 5, 2020 - 
In this video from the Stanford HPC Conference, Katie Lewis presents "The Incorporation of Machine Learning into Scientific Simulations at Lawrence Livermore National Laboratory." Read more and watch the video at insideHPC.

New ML platform generates novel COVID-19 antibody sequences for experimental testing

May 1, 2020 - 
LLNL researchers have identified an initial set of therapeutic antibody sequences, designed in a few weeks using machine learning and supercomputing, aimed at binding and neutralizing SARS-CoV-2, the virus that causes COVID-19. The research team is performing experimental testing on the chosen antibody designs. Read more at LLNL News.

Upgrades for LLNL supercomputer from AMD, Penguin Computing aid COVID-19 research

April 21, 2020 - 
Under a new agreement, AMD will supply upgraded graphics accelerators for LLNL’s Corona supercomputing cluster, expected to nearly double the system’s peak compute power. The system will be used by scientists through the public/private COVID-19 HPC Consortium, and by LLNL researchers, who are working on discovering potential antibodies and anti-viral compounds for SARS-CoV-2, the virus that...